Calculates allele frequency of the first and second allele for each loci A very simple function to report allele frequencies

Calculates allele frequency of the first and second allele for each loci A very simple function to report allele frequencies

gl.alf(x)

Arguments

x

Name of the genlight object containing the SNP data [required].

Value

A simple data.frame with alf1, alf2.

Author

Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr)

Examples

#for the first 10 loci only
gl.alf(possums.gl[,1:10])
#>          alf1      alf2
#> X1  0.4633333 0.5366667
#> X2  0.6133333 0.3866667
#> X3  0.5866667 0.4133333
#> X4  0.6083333 0.3916667
#> X5  0.5033333 0.4966667
#> X6  0.3416667 0.6583333
#> X7  0.5183333 0.4816667
#> X8  0.5933333 0.4066667
#> X9  0.4933333 0.5066667
#> X10 0.5483333 0.4516667
barplot(t(as.matrix(gl.alf(possums.gl[,1:10]))))