Merges two or more populations in a genlight object into one population
gl.merge.pop.Rd
Individuals are assigned to populations based on the specimen metadata data file (csv) used with gl.read.dart().
This script assigns individuals from two nominated populations into a new single population. It can also be used to rename populations.
The script returns a genlight object with the new population assignments.
Arguments
- x
Name of the genlight object containing SNP genotypes [required].
- old
A list of populations to be merged [required].
- new
Name of the new population [required].
- verbose
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].
Author
Custodian: Arthur Georges -- Post to https://groups.google.com/d/forum/dartr
Examples
gl <- gl.merge.pop(testset.gl, old=c('EmsubRopeMata','EmvicVictJasp'), new='Outgroup')
#> Starting gl.merge.pop
#> Processing genlight object with SNP data
#> Merging a list of populations into one
#> Merging EmsubRopeMata EmvicVictJasp into Outgroup
#> Completed: gl.merge.pop
#>