Converts a vcf file into a genlight object
gl.read.vcf.Rd
This function needs package vcfR, please install it. The converted genlight object does not have individual metrics. You need to add them 'manually' to the other$ind.metrics slot.
Arguments
- vcffile
A vcf file (works only for diploid data) [required].
- verbose
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2, unless specified using gl.set.verbosity].
Author
Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)
Examples
if (FALSE) {
obj <- gl.read.vcf(system.file('extdata/test.vcf', package='dartR'))
}