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Converts a vcf file into a genlight object

Source: R/gl.read.vcf.r
gl.read.vcf.Rd

This function needs package vcfR, please install it. The converted genlight object does not have individual metrics. You need to add them 'manually' to the other$ind.metrics slot.

Usage

gl.read.vcf(vcffile, verbose = NULL)

Arguments

vcffile

A vcf file (works only for diploid data) [required].

verbose

Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2, unless specified using gl.set.verbosity].

Value

A genlight object.

Author

Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)

Examples

if (FALSE) { # \dontrun{
obj <- gl.read.vcf(system.file('extdata/test.vcf', package='dartR'))
} # }