Creates a dispersal file as input for the function gl.sim.WF.run
gl.sim.create_dispersal.RdThis function writes a csv file called "dispersal_table.csv" which contains
the dispersal variables for each pair of populations to be used as input for
the function gl.sim.WF.run.
The values of the variables can be modified using the columns "transfer_each_gen" and "number_transfers" of this file.
See documentation and tutorial for a complete description of the simulations. These documents can be accessed by typing in the R console: browseVignettes(package="dartR”)
Usage
gl.sim.create_dispersal(
number_pops,
dispersal_type = "all_connected",
number_transfers = 1,
transfer_each_gen = 1,
outpath = tempdir(),
outfile = "dispersal_table.csv",
verbose = NULL
)Arguments
- number_pops
Number of populations [required].
- dispersal_type
One of: "all_connected", "circle" or "line" [default "all_connected"].
- number_transfers
Number of dispersing individuals. This value can be . modified by hand after the file has been created [default 1].
- transfer_each_gen
Interval of number of generations in which dispersal occur. This value can be modified by hand after the file has been created [default 1].
- outpath
Path where to save the output file. Use outpath=getwd() or outpath='.' when calling this function to direct output files to your working directory [default tempdir(), mandated by CRAN].
- outfile
File name of the output file [default 'dispersal_table.csv'].
- verbose
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2, unless specified using gl.set.verbosity].
Value
A csv file containing the dispersal variables for each pair of
populations to be used as input for the function gl.sim.WF.run.
See also
Other simulation functions:
gl.sim.WF.run(),
gl.sim.WF.table()
Author
Custodian: Luis Mijangos -- Post to https://groups.google.com/d/forum/dartr