Simulates mutations within a genlight object
gl.sim.mutate.Rd
This script is intended to be used within the simulation framework of dartR. It adds the ability to add a constant mutation rate across all loci. Only works currently for biallelic data sets (SNPs). Mutation rate is checking for all alleles position and mutations at loci with missing values are ignored and in principle 'double mutations' at the same loci can occur, but should be rare.
Arguments
- x
Name of the genlight object containing the SNP data [required].
- mut.rate
Constant mutation rate over nInd*nLoc*2 possible locations [default 1e-6]
Author
Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)