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Converts a genlight object into faststructure format (to run faststructure elsewhere)

Source: R/gl2faststructure.r
gl2faststructure.Rd

Recodes in the quite specific faststructure format (e.g first six columns need to be there, but are ignored...check faststructure documentation (if you find any :-( )))

Usage

gl2faststructure(
  x,
  outfile = "gl.str",
  outpath = tempdir(),
  probar = FALSE,
  verbose = NULL
)

Arguments

x

Name of the genlight object containing the SNP data [required].

outfile

File name of the output file (including extension) [default "gl.str"].

outpath

Path where to save the output file [default tempdir(), mandated by CRAN]. Use outpath=getwd() or outpath='.' when calling this function to direct output files to your working directory.

probar

Switch to show/hide progress bar [default FALSE].

verbose

Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].

Value

returns no value (i.e. NULL)

Details

The script writes out the a file in faststructure format.

Author

Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)