This function exports a genlight object into a SNPassoc object. See package
SNPassoc for details. This function needs package SNPassoc. At the time of
writing (August 2020) the package was no longer available from CRAN. To
install the package check their github repository.
https://github.com/isglobal-brge/SNPassoc and/or use
install_github('isglobal-brge/SNPassoc')
to install the function and
uncomment the function code.
Arguments
- x
Name of the genlight object containing the SNP data [required].
- verbose
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].
- installed
Switch to run the function once SNPassoc package i s installed [default FALSE].
References
Gonzalez, J.R., Armengol, L., Sol?, X., Guin?, E., Mercader, J.M., Estivill, X. and Moreno, V. (2017). SNPassoc: an R package to perform whole genome association studies. Bioinformatics 23:654-655.
Author
Bernd Guber (Post to https://groups.google.com/d/forum/dartr)