Population assignment probabilities
This function takes one individual and estimates their probability of coming from individual populations from multilocus genotype frequencies.
Name of the genlight object containing the SNP data [required].
Name of the individual to be assigned to a population [required].
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2, unless specified using gl.set.verbosity].
This function is a re-implementation of the function multilocus_assignment from package gstudio. Description of the method used in this function can be found at: https://dyerlab.github.io/applied_population_genetics/population-assignment.html
Custodian: Luis Mijangos -- Post to https://groups.google.com/d/forum/dartr
require("dartR.data") res <- utils.assignment_2(platypus.gl,unknown="T27") #> Starting utils.assignment_2 #> Processing genlight object with SNP data #> Warning: data include loci that are scored NA across all individuals. #> Consider filtering using gl <- gl.filter.allna(gl) #> Assigning individual T27 against population SEVERN_ABOVE #> Assigning individual T27 against population SEVERN_BELOW #> Assigning individual T27 against population TENTERFIELD #> Completed: utils.assignment_2 #>