Calculates mean observed heterozygosity, mean expected heterozygosity and Fis per locus, per population and various population differentiation measures

This is a re-implementation of hierfstat::basics.stats specifically for genlight objects. Formula (and hence results) match exactly the original version of hierfstat::basics.stats but it is much faster.

utils.basic.stats(x, digits = 4)

Arguments

x

A genlight object containing the SNP genotypes [required].

digits

Number of decimals to report [default 4]

Value

A list with with the statistics for each population

Author

Luis Mijangos and Carlo Pacioni (bugs? Post to https://groups.google.com/d/forum/dartr)

Examples

require("dartR.data")
out <- utils.basic.stats(platypus.gl)